Sorry guys, I must not have been subscribed to this thread and missed your replies. I checked the agent Trace.log and this group of errors show up every check in:
2015-12-17 21:51:58 Error: CAgentSecurityModule [Thread 7f85e8dfa700]: Certificated user verification failed with: VerifyDnsSubjectAltName: Hostname does not match any supported record in$
2015-12-17 21:51:58 Error: NetworkModule [Thread 7f85e2bfd700]: Receive: NodSslWriteEncryptedData: Internal error in the underlying implementations., ResolvedIpAddress:::1, ResolvedHostna$
2015-12-17 21:51:58 Error: NetworkModule [Thread 7f85e2bfd700]: Protocol failure for session id 2443, error:Receive: NodSslWriteEncryptedData: Internal error in the underlying implementat$
2015-12-17 21:51:58 Error: CReplicationModule [Thread 7f8592bfd700]: CReplicationManager: Replication (network) connection to 'host: "localhost" port: 2222' failed with: Receive: NodSslWr$
2015-12-17 21:51:58 Error: CAgentSecurityModule [Thread 7f85e8dfa700]: Certificated user verification failed with: VerifyDnsSubjectAltName: Hostname does not match any supported record in$
2015-12-17 21:51:58 Error: NetworkModule [Thread 7f85e2bfd700]: Receive: NodSslWriteEncryptedData: Internal error in the underlying implementations., ResolvedIpAddress:127.0.0.1, Resolved$
2015-12-17 21:51:58 Error: NetworkModule [Thread 7f85e2bfd700]: Protocol failure for session id 2444, error:Receive: NodSslWriteEncryptedData: Internal error in the underlying implementat$
2015-12-17 21:51:58 Error: CReplicationModule [Thread 7f8592bfd700]: CReplicationManager: Replication (network) connection to 'host: "127.0.0.1" port: 2222' failed with: Receive: NodSslWr$
I noticed it's saying that the name doesn't match the certificate. I guess at some point I changed something so I recreated my installer and verified that the name on the certificate matched my server name. Once I installed that it started reporting again.
Thank you guys for the help!