Hi mwhalenhtc,
I'm experiencing the exact same issue. We use Connectwise/Labtech as well and this is only happening for four of our clients. All four clients were recently upgraded from v 5 or so to 6.6. I've ensured the global policy that we use that also whitelists all the necessary LT related folders/executables are showing on the workstations. The odd thing is it's not happening for every workstation for those companies, it's almost sporadic. It started mid last week for us. I've opened a ticket with ESET as well and I've been told to run the log collector as well, but it's been tricky as I have to schedule with the client first.
Do you have any updates?